[期刊论文]


A systematic review of automatic text summarization for biomedical literature and EHRs

作   者:
Mengqian Wang;Manhua Wang;Fei Yu;Yue Yang;Jennifer Walker;Javed Mostafa;

出版年:2021

页     码:2287 - 2297
出版社:Oxford University Press (OUP)


摘   要:

Objective

Biomedical text summarization helps biomedical information seekers avoid information overload by reducing the length of a document while preserving the contents’ essence. Our systematic review investigates the most recent biomedical text summarization researches on biomedical literature and electronic health records by analyzing their techniques, areas of application, and evaluation methods. We identify gaps and propose potential directions for future research.

Materials and Methods

This review followed the PRISMA methodology and replicated the approaches adopted by the previous systematic review published on the same topic. We searched 4 databases (PubMed, ACM Digital Library, Scopus, and Web of Science) from January 1, 2013 to April 8, 2021. Two reviewers independently screened title, abstract, and full-text for all retrieved articles. The conflicts were resolved by the third reviewer. The data extraction of the included articles was in 5 dimensions: input, purpose, output, method, and evaluation.

Results

Fifty-eight out of 7235 retrieved articles met the inclusion criteria. Thirty-nine systems used single-document biomedical research literature as their input, 17 systems were explicitly designed for clinical support, 47 systems generated extractive summaries, and 53 systems adopted hybrid methods combining computational linguistics, machine learning, and statistical approaches. As for the assessment, 51 studies conducted an intrinsic evaluation using predefined metrics.

Discussion and Conclusion

This study found that current biomedical text summarization systems have achieved good performance using hybrid methods. Studies on electronic health records summarization have been increasing compared to a previous survey. However, the majority of the works still focus on summarizing literature.



关键字:

automatic text summarization;biomedical and health sciences literature;computational linguistics;electronic health records;machine learning


所属期刊
Journal of the American Medical Informatics Association
ISSN: 1067-5027
来自:Oxford University Press (OUP)